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  1. Kazarinoff, P. (Ed.)
    Disparities in undergraduate STEM degree completions across the United States are a national concern. Undergraduate-level research opportunities are vital for developing future researchers and building their scientific identity. These experiences can help students in community colleges acquire 21st-century skills and build confidence in their ability to do science [1-3]. The development and implementation of guided research experiences provide users with a topic they are familiar with but not necessarily experts in, like SARS-CoV2 infections. In this particular study, the Immune Epitope Database (IEDB) was used to identify amino acid residues located on the immunogenic regions of the spike glycoprotein of SARS-CoV-2 variants: Alpha, Beta, Gamma, Delta, and Omicron. IEDB is a web-based bioinformatics tool that contains published epitope information and prediction aids that can be used as a research platform for studying infectious diseases. The objective of this study aimed to map the immunogenic regions on the spike glycoproteins of the SARS-CoV-2 variants and predict the immune evasion of these variants [4-6]. Identifying the antigenic determinations that bind to the antibodies is essential for designing future candidates for peptide-based vaccines. This study aims to map the immunogenic regions on the spike glycoproteins of the SARS-CoV-2 variants and predict the immune evasion of these variants [4-6]. Identifying the antigenic determinations that bind to the antibodies is essential for designing future candidates for peptide-based vaccines. This research identifies regions where mutations have occurred in the virus, which are important to study as they can affect the virus’s immune evasion and impact available vaccines. Targeting multiple immunogenic regions unaffected by mutations can serve as potential targets for new vaccines, providing better protection against different variants. 
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    Free, publicly-accessible full text available August 18, 2024
  2. Abstract

    Comparative studies, especially of related species that span across ecoregions, have the potential to increase our understanding of different ecological or evolutionary pressures that may drive host–pathogen dynamics. We quantified differences in immune investment, via differential leukocyte counts and bacteria‐killing assays, across four closely related species ofGopherustortoises, found across a gradient from the desert southwest to the subtropical southeast of the United States. We further quantified differences in a commensal nasal microbe (Pasteurella testudinis) and tested for associations among immune measures,P. testudinis, and previously quantified levels of the pathogenMycoplasma agassiziiand upper respiratory tract disease (URTD). We also evaluated the potential influence of environmental variables on immune investment,P. testudinis, and disease. We found that tortoise species in more arid environments had a reduced investment in inflammatory leukocytes, possibly as a strategy to reduce water loss, and invested more heavily in innate anti‐inflammatory leukocytes. Conversely, we found that species in moister, resource‐rich environments may face greater pathogen pressure, likely due to increased population densities and transmission rates among host tortoises. These tortoises had increased investment in inflammatory cells and appeared to reduce their nasal microbes (includingP. testudinis) when they exhibited URTD. Thus, we quantified two negative correlational patterns: (1) between inflammatory responses and water conservation and (2) between resource quality and transmission rates. We hypothesize that these relationships across species may reflect variable development or evolution of innate immune functions.

     
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  3. null (Ed.)
    Ladybird homeobox (Lbx) transcription factors have crucial functions in muscle and nervous system development in many animals. Amniotes have two Lbx genes, but only Lbx1 is expressed in spinal cord. In contrast, teleosts have three lbx genes and we show here that zebrafish lbx1a, lbx1b and lbx2 are expressed by distinct spinal cell types, and that lbx1a is expressed in dI4, dI5 and dI6 interneurons, as in amniotes. Our data examining lbx expression in Scyliorhinus canicula and Xenopus tropicalis suggest that the spinal interneuron expression of zebrafish lbx1a is ancestral, whereas lbx1b has acquired a new expression pattern in spinal cord progenitor cells. lbx2 spinal expression was probably acquired in the ray-finned lineage, as this gene is not expressed in the spinal cords of either amniotes or S. canicula. We also show that the spinal function of zebrafish lbx1a is conserved with mouse Lbx1. In zebrafish lbx1a mutants, there is a reduction in the number of inhibitory spinal interneurons and an increase in the number of excitatory spinal interneurons, similar to mouse Lbx1 mutants. Interestingly, the number of inhibitory spinal interneurons is also reduced in lbx1b mutants, although in this case the number of excitatory interneurons is not increased. lbx1a;lbx1b double mutants have a similar spinal interneuron phenotype to lbx1a single mutants. Taken together these data suggest that lbx1b and lbx1a may be required in succession for correct specification of dI4 and dI6 spinal interneurons, although only lbx1a is required for suppression of excitatory fates in these cells. 
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  4. We present the discovery of an Earth-mass planet (Mbsini= 1.26 ± 0.21M) on a 15.6 d orbit of a relatively nearby (d ~9.6 pc) and low-mass (0.167 ± 0.011M) M5.0 V star, Wolf 1069. Sitting at a separation of 0.0672 ± 0.0014 au away from the host star puts Wolf 1069 b in the habitable zone (HZ), receiving an incident flux ofS= 0.652 ± 0.029S. The planetary signal was detected using telluric-corrected radial-velocity (RV) data from the CARMENES spectrograph, amounting to a total of 262 spectroscopic observations covering almost four years. There are additional long-period signals in the RVs, one of which we attribute to the stellar rotation period. This is possible thanks to our photometric analysis including new, well-sampled monitoring campaigns undergone with the OSN and TJO facilities that supplement archival photometry (i.e., from MEarth and SuperWASP), and this yielded an updated rotational period range ofProt= 150–170 d, with a likely value at 169.3−3.6+3.7. The stellar activity indicators provided by the CARMENES spectra likewise demonstrate evidence for the slow rotation period, though not as accurately due to possible factors such as signal aliasing or spot evolution. Our detectability limits indicate that additional planets more massive than one Earth mass with orbital periods of less than 10 days can be ruled out, suggesting that perhaps Wolf 1069 b had a violent formation history. This planet is also the sixth closest Earth-mass planet situated in the conservative HZ, after Proxima Centauri b, GJ 1061 d, Teegarden’s Star c, and GJ 1002 b and c. Despite not transiting, Wolf 1069 b is nonetheless a very promising target for future three-dimensional climate models to investigate various habitability cases as well as for sub-m s−1RV campaigns to search for potential inner sub-Earth-mass planets in order to test planet formation theories.

     
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  5. We report the discovery and characterization of two small transiting planets orbiting the bright M3.0V star TOI-1468 (LSPM J0106+1913), whose transit signals were detected in the photometric time series in three sectors of the TESS mission. We confirm the planetary nature of both of them using precise radial velocity measurements from the CARMENES and MAROON-X spectrographs, and supplement them with ground-based transit photometry. A joint analysis of all these data reveals that the shorter-period planet, TOI-1468 b ( P b = 1.88 d), has a planetary mass of M b = 3.21 ± 0.24 M ⊕ and a radius of R b = 1.280 −0.039 +0.038 R ⊕ , resulting in a density of ρ b = 8.39 −0.92 +1.05 g cm −3 , which is consistent with a mostly rocky composition. For the outer planet, TOI-1468 c ( P c = 15.53 d), we derive a mass of M c = 6.64 −0.68 +0.67 M ⊕ ,aradius of R c = 2.06 ± 0.04 R ⊕ , and a bulk density of ρ c = 2.00 −0.19 +0.21 g cm −3 , which corresponds to a rocky core composition with a H/He gas envelope. These planets are located on opposite sides of the radius valley, making our system an interesting discovery as there are only a handful of other systems with the same properties. This discovery can further help determine a more precise location of the radius valley for small planets around M dwarfs and, therefore, shed more light on planet formation and evolution scenarios. 
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  6. Context . The Gl 486 system consists of a very nearby, relatively bright, weakly active M3.5 V star at just 8 pc with a warm transiting rocky planet of about 1.3 R ⊕ and 3.0 M ⊕ . It is ideal for both transmission and emission spectroscopy and for testing interior models of telluric planets. Aims . To prepare for future studies, we aim to thoroughly characterise the planetary system with new accurate and precise data collected with state-of-the-art photometers from space and spectrometers and interferometers from the ground. Methods . We collected light curves of seven new transits observed with the CHEOPS space mission and new radial velocities obtained with MAROON-X at the 8.1 m Gemini North telescope and CARMENES at the 3.5 m Calar Alto telescope, together with previously published spectroscopic and photometric data from the two spectrographs and TESS. We also performed near-infrared interferometric observations with the CHARA Array and new photometric monitoring with a suite of smaller telescopes (AstroLAB, LCOGT, OSN, TJO). This extraordinary and rich data set was the input for our comprehensive analysis. Results . From interferometry, we measure a limb-darkened disc angular size of the star Gl 486 at θ LDD = 0.390 ± 0.018 mas. Together with a corrected Gaia EDR3 parallax, we obtain a stellar radius R * = 0.339 ± 0.015 R ⊕ . We also measure a stellar rotation period at P rot = 49.9 ± 5.5 days, an upper limit to its XUV (5-920 A) flux informed by new Hubble /STIS data, and, for the first time, a variety of element abundances (Fe, Mg, Si, V, Sr, Zr, Rb) and C/O ratio. Moreover, we imposed restrictive constraints on the presence of additional components, either stellar or sub-stellar, in the system. With the input stellar parameters and the radial-velocity and transit data, we determine the radius and mass of the planet Gl 486 b at R p = 1.343 −0.062 +0.063 R ⊕ and M p = 3.00 −0.12 +0.13 M ⊕ , with relative uncertainties of the planet radius and mass of 4.7% and 4.2%, respectively. From the planet parameters and the stellar element abundances, we infer the most probable models of planet internal structure and composition, which are consistent with a relatively small metallic core with respect to the Earth, a deep silicate mantle, and a thin volatile upper layer. With all these ingredients, we outline prospects for Gl 486 b atmospheric studies, especially with forthcoming James Webb Space Telescope ( Webb ) observations. 
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  7. We report the discovery of a Neptune-like planet (LP 714-47 b, P = 4.05204 d, m b = 30.8 ± 1.5 M ⊕ , R b = 4.7 ± 0.3 R ⊕ ) located in the “hot Neptune desert”. Confirmation of the TESS Object of Interest (TOI 442.01) was achieved with radial-velocity follow-up using CARMENES, ESPRESSO, HIRES, iSHELL, and PFS, as well as from photometric data using TESS, Spitzer , and ground-based photometry from MuSCAT2, TRAPPIST-South, MONET-South, the George Mason University telescope, the Las Cumbres Observatory Global Telescope network, the El Sauce telescope, the TÜBİTAK National Observatory, the University of Louisville Manner Telescope, and WASP-South. We also present high-spatial resolution adaptive optics imaging with the Gemini Near-Infrared Imager. The low uncertainties in the mass and radius determination place LP 714-47 b among physically well-characterised planets, allowing for a meaningful comparison with planet structure models. The host star LP 714-47 is a slowly rotating early M dwarf ( T eff = 3950 ± 51 K) with a mass of 0.59 ± 0.02 M ⊙ and a radius of 0.58 ± 0.02 R ⊙ . From long-term photometric monitoring and spectroscopic activity indicators, we determine a stellar rotation period of about 33 d. The stellar activity is also manifested as correlated noise in the radial-velocity data. In the power spectrum of the radial-velocity data, we detect a second signal with a period of 16 days in addition to the four-day signal of the planet. This could be shown to be a harmonic of the stellar rotation period or the signal of a second planet. It may be possible to tell the difference once more TESS data and radial-velocity data are obtained. 
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